I don't agree that this is minor. Lack of attention to detail with so many things is a symptom of a larger problem. Certainly some of this stuff can be fixed, but some of it is damage that has been done. It's time for a meeting where you sit down and get agreement before proceeding further or paying any more money. "Yeah, we know" is not professional or acceptable in my book. You need to get a commitment:

1. The cabinets get leveled before the counters get installed

2. The window sills are redone properly

3. The floors get repaired and better damage-proofing gets done now

4. The messed up door gets repaired or replaced

If you continue to allow yourself to get deflected, you won't be happy at the end. For example, if the cabinets don't get leveled, and the counters get installed, fixing it later is more than a punch list item.

Getting sloppy contractors to perform is usually not fun, but you need to grit your teeth and have a "come to Jesus" meeting with this guy sooner rather than at the end when he thinks he is finished, gets his money, and walks away promising he'll fix all the problems "soon."

I'm right between Sophie and kudzu9 on this one. On one hand, I don't even like customers to watch me work because they panic when they see how bad it has to look to get to good. Door adjustments are last. On the other hand, setting countertops before leveling cabinets can be big trouble. You can't let that slide.

Insist on the critical stuff and let your contractor know you'll differ to his judgement on the smaller stuff. You'll look quite reasonable, and he can't argue with that.

Customers think out of adjustment doors equates to out of level cabinets. They don’t understand that the boxes are independent of the doors. Touch ups wait until damage is done happening. Etc. Without pictures, I’m not going to say that the situation is anything but that. Minor.

Actual pictures should be furnished.

Thanks for the input so far. Attached are photos of the uneven closet doors. Note the gaps differ everywhere. It's an unusual sized space, so we used Ikea boxes and then had the door fronts custom made. My concern is that these doors can't be made even, and we are stuck with this.

If that is Pax, then you should have used Pax doors if you wanted something workable and warrantable. No one can guarantee that a kludged non standard created parts and pieces “solution” will actually work. Who knows what parts and pieces they actually used here?

Unless custom is created as custom, awkward kludged may be as good as it gets.