I would hang them all at the same height with the rod just skimming the top of the window, creating a waterline around the room...ignore the ceiling height.

The height of a shower rod relative to the position of a tub is largely a matter of use and desired effect. Some shower curtains extend almost entirely to the floor while others drop just below the rim of an attractive claw foot tub. What is certain is the shower curtain liner needs to hang down into the tub below its rim so water does not splash onto the floor. Hanging a Shower Rod Shower curtains are commonly 6 feet in length from top to bottom. They are made longer as well. For custom bathtub designs, their length can vary greatly. If you are installing the shower rod anew and need to know where to hang it, the first thing to do is measure the length of the liner. If it is 6 feet long, figure that it should hang below the rim of the tub at least 5 inches. That means the rod should be placed 5 feet 7 inches from the top of the tub. However, consider the difference between the rod placement and where the liner attaches to the curtain rings. If the liner dangles 2 inches below the rod, you can add that to the height of the rod, placing it 5 feet 9 inches above the tub. The curtain also requires some consideration. It should not drag along the floor; rather, it should be at least 2 inches above it when hanging. If you want to showcase a claw foot tub, hang the curtain just a few inches below the rim of the tub. Here is a link that might be useful: shower rods

I think that the best bet is to make them as consistent as possible in relation to window, regardless of ceiling height.

Somewhat off topic, you have a very nice living room, and I agree with removing those structures at each side of the fireplace. I would probably put bookcases there, although they don't have to be tall. Large paintings above them or gallery walls would take away the emphasis from the functional TV. I would remove everything off the mantel. I notice that your rug is really too small for the space, and a larger and more colorful one, perhaps an Oriental, would make a much greater statement and brighten this room considerably. You can pull in the colors from the rug for the art and other accessories. Your rooms seem very monochromatic and you may prefer that, but color is coming back in a big way in home decoration, and I think it actually makes people feel better when everything is not gray or beige, and they're surrounded by pretty colors. I would pick a carpet that has some warm colors, in addition to cooler colors, to give the room some depth.